Bioinformatics Research and Applications [electronic resource] : 9th International Symposium, ISBRA 2013, Charlotte, NC, USA, May 20-22, 2013. Proceedings / edited by Zhipeng Cai, Oliver Eulenstein, Daniel Janies, Daniel Schwartz.

Peptide Identification from Mass Spectrometry -- Identifying Critical Transitions of Biological Processes by Dynamical Network Biomarkers -- Computational Behavioral Ecology -- Unusual RNA Structures: Information Content in RNAs from the "Prebiotic Ribosome" to Modern Viruses -- The Radiation Hybrid Map Construction Problem Is FPT -- Reconstructing Ancestral Genomic Orders Using Binary Encoding and Probabilistic Models -- Computational Methods for the Parallel 3D Simulation of Biochemical Kinetics at the Microscopic Scale -- A Tool for Non-binary Tree Reconciliation -- Patterns of Chromatin-Modifications Discriminate Different Genomic Features in Arabidopsis -- Inferring Time-Delayed Gene Regulatory Networks Using Cross-Correlation and Sparse Regression -- A Simulation of Synthetic agr System in E.coli -- Gene Regulatory Networks from Gene Ontology -- Partitioning Biological Networks into Highly Connected Clusters with Maximum Edge Coverage -- Reconstructing k-Reticulated Phylogenetic Network from a Set of Gene Trees -- LCR Finder: A de Novo Low Copy Repeat Finder for Human Genome -- Heuristic Algorithms for the Protein Model Assignment Problem -- Alignment of DNA Mass-Spectral Profiles Using Network Flows -- A Context-Driven Gene Prioritization Method for Web-Based Functional Genomics -- Exploiting Dependencies of Patterns in Gene Expression Analysis Using Pairwise Comparisons -- Cloud Computing for De Novo Metagenomic Sequence Assembly -- Protein Closed Loop Prediction from Contact Probabilities -- A Graph Approach to Bridge the Gaps in Volumetric Electron Cryo-Microscopy Skeletons -- Measure the Semantic Similarity of GO Terms Using Aggregate Information Content -- Scalable and Versatile k-mer Indexing for High-Throughput Sequencing Data -- POMAGO: Multiple Genome-Wide Alignment Tool for Bacteria -- Effect of Incomplete Lineage Sorting on Tree-Reconciliation-Based Inference of Gene Duplication -- Ellipsoid-Weighted Protein Conformation Alignment -- Construction of Uncertain Protein-Protein Interaction Networks and Its Applications -- Does Accurate Scoring of Ligands against Protein Targets Mean Accurate Ranking?.