Algorithms in Bioinformatics [electronic resource] : 13th International Workshop, WABI 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings / edited by Aaron Darling, Jens Stoye.

Extending the Reach of  Phylogenetic Inference -- Protein (Multi-)Location Prediction: Using Location Inter-Dependencies in a Probabilistic Framework -- Towards Reliable Automatic Protein Structure Alignment -- A Minimum-Labeling Approach for Reconstructing Protein Networks across Multiple Conditions -- Faster mass decomposition -- On NP-Hardness of the Paired de Bruijn Sound Cycle Problem -- Accurate Decoding of Pooled Sequenced Data Using Compressed Sensing -- A Novel Combinatorial Method for Estimating Transcript Expression with RNA-Seq: Bounding the Number of Paths -- A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs and its application to the detection of alternative splicing in RNA-seq data -- Graph-Distance within RNA Secondary Structure Ensembles -- Faster Algorithms for RNA-folding using the Four-Russians method -- Algorithms for the Majority Rule (+) Consensus Tree and the Frequency Difference Consensus Tree -- The generalized Robinson-Foulds metric -- Computing the Skewness of the Phylogenetic Mean Pairwise Distance in Linear Time -- Characterizing Compatibility and Agreement of Unrooted Trees via Cuts in Graphs -- Unifying Parsimonious Tree -- Sibelia: A scalable and comprehensive synteny block generation tool for closely related microbial genomes -- On the matrix median problem -- Fixed-Parameter Algorithm for Minimum Common String Partition with Few Duplications -- MSARC: Multiple Sequence Alignment by Residue Clustering -- Mutual Enrichment in Ranked Lists and the Statistical Assessment of Position Weight Matrix Motifs -- Probabilistic Approaches to Alignment with Tandem Repeats -- Multiscale Identification of Topological Domains in Chromatin -- Modeling Intratumor Gene Copy Number Heterogeneity using Fluorescence in Situ Hybridization data -- Phylogenetic Analysis of Cell Types using Histone Modifications -- Detecting Superbubbles in Assembly Graphs -- A hybrid assembly using high throughput short and long -- Using cascading Bloom filters to improve the memory usage for de Bruijn graphs.